Updated pytools help section

.gitlab-ci.yml

@@ -15,7 +15,10 @@ build-and-push pangetools:
     name: kaczmarj/apptainer:latest
     entrypoint: [""]
   rules:
-    - if: $CI_COMMIT_TAG                 # Run this job when a tag is created
+    - changes: 
+      - PanGeTools.sif
+    - exists:                  # Run this job when a tag is created
+      - $CI_COMMIT_TAG
   script:
     - sed -i "s/VERSION_NUMBER/${CI_COMMIT_TAG#v}/" PanGeTools.def
     - apptainer build PanGeTools.sif PanGeTools.def
@@ -28,9 +31,12 @@ build-and-push pytools:
     name: kaczmarj/apptainer:latest
     entrypoint: [""]
   rules:
-    - if: $CI_COMMIT_TAG                 # Run this job when a tag is created
+    - changes: 
+      - PyTools.sif
+    - exists:                  
+      - $CI_COMMIT_TAG              # Run this job when a tag is created
   script:
-    - sed -i "s/VERSION_NUMBER/${CI_COMMIT_TAG#v}/" PanGeTools.def
+    - sed -i "s/VERSION_NUMBER/${CI_COMMIT_TAG#v}/" PyTools.def
     - apptainer build PyTools.sif PyTools.def
     - apptainer push --docker-username "${CI_REGISTRY_USER}" --docker-password "${CI_REGISTRY_PASSWORD}" PyTools.sif oras://"$CI_REGISTRY_IMAGE"/pytools:"$CI_COMMIT_TAG"
     - apptainer push --docker-username "${CI_REGISTRY_USER}" --docker-password "${CI_REGISTRY_PASSWORD}" PyTools.sif oras://"$CI_REGISTRY_IMAGE"/pytools:latest

PyTools.def

@@ -24,4 +24,5 @@ Stage: build
         - RagTag
         - Biopython
         - pandas
-        - numpy
\ No newline at end of file
+        - numpy
+    To use the image, use apptainer run <image path>.sif [command]
\ No newline at end of file