commented on
issue #159
"[AVITI] Need to anonymize fastq header-> problem"
at
GeT-nextflow-NGL-Bi / wf-Illumina-nf
a workaround for future runs : set run name with SideA|B and aviti where to run...
commented on
issue #159
"[AVITI] Need to anonymize fastq header-> problem"
at
GeT-nextflow-NGL-Bi / wf-Illumina-nf
correct (I hope) awk command could be :
zcat /work/project/PlaGe/data/Element/20250221_AVITI3_Marie_SideB_MARIE_TempSo_T-sperm_1740389401/Samples/T...
commented on
issue #159
"[AVITI] Need to anonymize fastq header-> problem"
at
GeT-nextflow-NGL-Bi / wf-Illumina-nf
analyses released too teams since 20/02/2025 are hidden again : ...
commented on
issue #159
"[AVITI] Need to anonymize fastq header-> problem"
at
GeT-nextflow-NGL-Bi / wf-Illumina-nf
awk -F':' 'BEGIN{OFS=":"} {if (\$0 ~ /^@/) {\$2=""; sub("::", ":", \$0)} print}' - > ${fileName}.${extension}...
opened
issue
#159
"[AVITI] Need to anonymize fastq header-> problem"
at
GeT-nextflow-NGL-Bi / wf-Illumina-nf
closed
issue
#158
"[RNA][conf] Stop keeping non-rRNA fastq files"
at
GeT-nextflow-NGL-Bi / wf-Illumina-nf
destroyed milestone
in
GeT-nextflow-NGL-Bi / wf-Illumina-nf
opened
issue
#158
"[RNA][conf] Stop keeping non-rRNA fastq files"
at
GeT-nextflow-NGL-Bi / wf-Illumina-nf
opened
issue
#157
"Get versions of samtools and qualimap modules"
at
GeT-nextflow-NGL-Bi / wf-Illumina-nf
-
f10db1fd · Merge branch 'dev_Jules' into 'master'
- ... and 6 more commits. Compare 332903e5...f10db1fd
-
ba6d615d · E.coli reference for conta has now generic name
- ... and 1 more commit. Compare 27bbe0ce...ba6d615d